/EXTERNAL McGill EMC/mapping_coverage/K006151_1_lane_gembs
BACK
SAMPLE K006151_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
837680577 |
100% |
76811656645 |
100% |
| Mapped |
828616911 |
98.92 % |
75905290045 |
98.82 % |
| Passed |
682389877 |
81.46 % |
61282586645 |
79.78 % |
| NotPassed |
146227034 |
17.46 % |
14622703400 |
19.04 % |
| |
|
|
|
|
| LowMAPQ |
125841054 |
15.02 % |
12584105400 |
16.38 % |
| MateUnmapped |
9063666 |
1.08 % |
906366600 |
1.18 % |
| Duplicate |
8795440 |
1.05 % |
879544000 |
1.15 % |
| BadOrientation |
36 |
0.00 % |
3600 |
0.00 % |
| LargeInsertSize |
90418 |
0.01 % |
9041800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11500086 |
1.37 % |
1150008600 |
1.50 % |
| Unmapped |
9063666 |
1.08 % |
906366600 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68219319100 |
100% |
| Passed |
57062332778 |
83.65 % |
| Trimmed |
3119650142 |
4.57 % |
| Clipped |
92243185 |
0.14 % |
| Overlapping |
6844489270 |
10.03 % |
| LowQuality |
1100603725 |
1.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |