/EXTERNAL McGill EMC/methylation/K006151_1_lane_gembs

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SAMPLE K006151_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26569051 18787679 70.71 %
NonRefCpG 258268 155650 60.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006151_1_lane_gembs_coverage_refCpG.png ./IMG//K006151_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006151_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006151_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006151_1_lane_gembs_quality_refcpg.png ./IMG//K006151_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006151_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5334210 10.32 % 2096022 5.12 % 47456 9.74 % 17447 4.93 %
Intermediate (0.3-0.7) 12610166 24.39 % 8628411 21.07 % 130897 26.86 % 79921 22.58 %
Methylated (0.7-1) 33753807 65.29 % 30236407 73.82 % 309024 63.41 % 256573 72.49 %
Median Methylation 0.810 0.840 0.790 0.840