{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 76771150, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 64894596, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 84.53, 
            "paired": 76771150, 
            "paired_qc_failed": 0, 
            "read1": 38385575, 
            "read1_qc_failed": 0, 
            "read2": 38385575, 
            "read2_qc_failed": 0, 
            "paired_properly": 62706550, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 81.68, 
            "with_itself": 64017242, 
            "with_itself_qc_failed": 0, 
            "singletons": 877354, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.14, 
            "diff_chroms": 113980, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 91343384, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 89445671, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.92, 
            "paired": 91343384, 
            "paired_qc_failed": 0, 
            "read1": 45671692, 
            "read1_qc_failed": 0, 
            "read2": 45671692, 
            "read2_qc_failed": 0, 
            "paired_properly": 87213841, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.48, 
            "with_itself": 88898599, 
            "with_itself_qc_failed": 0, 
            "singletons": 547072, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.6, 
            "diff_chroms": 153716, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 24986856, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 4870507, 
            "paired_opt_dupes": 8025, 
            "dupes_pct": 0.194923
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 38419123, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 536213, 
            "paired_opt_dupes": 12817, 
            "dupes_pct": 0.013957
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 24986067, 
            "distinct_read_pairs": 20115717, 
            "one_read_pair": 16276209, 
            "two_read_pair": 3030074, 
            "NRF": 0.805077, 
            "PBC1": 0.809129, 
            "PBC2": 5.371555
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 38404764, 
            "distinct_read_pairs": 37868795, 
            "one_read_pair": 37344268, 
            "two_read_pair": 515141, 
            "NRF": 0.986044, 
            "PBC1": 0.986149, 
            "PBC2": 72.493294
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 40232698, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40232698, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 40232698, 
            "paired_qc_failed": 0, 
            "read1": 20116349, 
            "read1_qc_failed": 0, 
            "read2": 20116349, 
            "read2_qc_failed": 0, 
            "paired_properly": 40232698, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 40232698, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 75765820, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 75765820, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 75765820, 
            "paired_qc_failed": 0, 
            "read1": 37882910, 
            "read1_qc_failed": 0, 
            "read2": 37882910, 
            "read2_qc_failed": 0, 
            "paired_properly": 75765820, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 75765820, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 94879, 
        "Np": 0, 
        "N_opt": 94879, 
        "N_consv": 94879, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 110, 
            "corr_est_frag_len": 0.204412543713585, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2353671, 
            "argmin_corr": 1500, 
            "min_corr": 0.1754044, 
            "NSC": 1.165379, 
            "RSC": 0.4837693
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.30678485815
        }, 
        "rep1-pr1": {
            "FRiP": 0.322201044755
        }, 
        "rep1-pr2": {
            "FRiP": 0.322190637192
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.245015626834
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.210511221855, 
            "auc": 0.493572338988, 
            "ch_div": 0.164488126322, 
            "elbow_pt": 2.44199026289e-207, 
            "jsd": 0.686382156895, 
            "syn_auc": 0.495357211952, 
            "syn_elbow_pt": 0.258060341124, 
            "syn_jsd": 0.383530133929
        }
    ]
}
