/EXTERNAL McGill EMC/K006152_1_lane_gembs

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SAMPLE K006152_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 923804274 100.00 % 461902137 100.00 % 461902137 100.00 %
General Reads 873127207 94.51 % 436644829 94.53 % 436482378 94.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 605757 0.07 % 303269 0.07 % 302488 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50071310 5.42 % 24954039 5.40 % 25117271 5.44 %
Bisulfite_reads C2T 452100474 48.94 % 226131827 48.96 % 225968647 48.92 %
Bisulfite_reads G2A 421632490 45.64 % 210816271 45.64 % 210816219 45.64 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 327978717
Average Unique 71.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 34462048633 36.94 % 15294177570 32.78 % 19167871063 41.09 %
Base Counts Overall C 11979355761 12.84 % 1262452736 2.71 % 10716903025 22.97 %
Base Counts Overall G 12301567256 13.18 % 10989668078 23.56 % 1311899178 2.81 %
Base Counts Overall T 33611249975 36.02 % 18641401950 39.96 % 14969848025 32.09 %
Base Counts Overall N 950010049 1.02 % 464415503 1.00 % 485594546 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9586492059835363
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 406605601



Mapping Quality

Mapping Quality Histogram
K006152_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006152_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0005.Bisulfite-Seq.DNA_Methylation.EGAX00001272815.fastq_MS000501