/EXTERNAL McGill EMC/mapping_coverage/K006152_1_lane_gembs
BACK
SAMPLE K006152_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
863147843 |
100% |
74154202088 |
100% |
| Mapped |
853618624 |
98.90 % |
73201280188 |
98.71 % |
| Passed |
642299733 |
74.41 % |
52069391088 |
70.22 % |
| NotPassed |
211318891 |
24.48 % |
21131889100 |
28.50 % |
| |
|
|
|
|
| LowMAPQ |
186518190 |
21.61 % |
18651819000 |
25.15 % |
| MateUnmapped |
9529219 |
1.10 % |
952921900 |
1.29 % |
| Duplicate |
10111111 |
1.17 % |
1011111100 |
1.36 % |
| BadOrientation |
206 |
0.00 % |
20600 |
0.00 % |
| LargeInsertSize |
401722 |
0.05 % |
40172200 |
0.05 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14287662 |
1.66 % |
1428766200 |
1.93 % |
| Unmapped |
9529219 |
1.10 % |
952921900 |
1.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
64218131400 |
100% |
| Passed |
48824698923 |
76.03 % |
| Trimmed |
2753080053 |
4.29 % |
| Clipped |
89424238 |
0.14 % |
| Overlapping |
12059316074 |
18.78 % |
| LowQuality |
491612112 |
0.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |