/EXTERNAL McGill EMC/methylation/K006152_1_lane_gembs

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SAMPLE K006152_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26478354 15159102 57.25 %
NonRefCpG 301264 115748 38.42 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006152_1_lane_gembs_coverage_refCpG.png ./IMG//K006152_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006152_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006152_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006152_1_lane_gembs_quality_refcpg.png ./IMG//K006152_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006152_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6051732 12.14 % 2003522 5.78 % 104076 18.75 % 28618 9.12 %
Intermediate (0.3-0.7) 13217887 26.51 % 7312022 21.09 % 161469 29.09 % 75230 23.97 %
Methylated (0.7-1) 30582144 61.35 % 25357503 73.13 % 289485 52.16 % 210053 66.92 %
Median Methylation 0.780 0.840 0.710 0.810