/EXTERNAL McGill EMC/K006153_1_lane_gembs/McGill0011.Bisulfite-Seq.DNA_Methylation.EGAX00001425097.release_6

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SAMPLE K006153_1_lane_gembs LANE McGill0011.Bisulfite-Seq.DNA_Methylation.EGAX00001425097.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 378327416 100.00 % 189163708 100.00 % 189163708 100.00 %
General Reads 369593438 97.69 % 185521879 98.07 % 184071559 97.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 634925 0.17 % 318804 0.17 % 316121 0.17 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8099053 2.14 % 3323025 1.76 % 4776028 2.52 %
Bisulfite_reads C2T 189427017 50.07 % 95078784 50.26 % 94348233 49.88 %
Bisulfite_reads G2A 180801346 47.79 % 90761899 47.98 % 90039447 47.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 155106178
Average Unique 82.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14830453610 38.81 % 6230163754 32.61 % 8600289856 45.01 %
Base Counts Overall C 4140508606 10.84 % 300196051 1.57 % 3840312555 20.10 %
Base Counts Overall G 4211803082 11.02 % 3913804871 20.49 % 297998211 1.56 %
Base Counts Overall T 14644968187 38.33 % 8470011665 44.33 % 6174956522 32.32 %
Base Counts Overall N 383335531 1.00 % 191358167 1.00 % 191977364 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9742353568205558
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 179362386



Mapping Quality

Mapping Quality Histogram
McGill0011.Bisulfite-Seq.DNA_Methylation.EGAX00001425097.release_6.mapq.png



Read Length

Read Length Reads
100 189163708
100 189163708



Insert Size Plot

Insert Size Histogram
McGill0011.Bisulfite-Seq.DNA_Methylation.EGAX00001425097.release_6.isize.png