/EXTERNAL McGill EMC/mapping_coverage/K006153_1_lane_gembs
BACK
SAMPLE K006153_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
367427789 |
100% |
33962169443 |
100% |
| Mapped |
363595555 |
98.96 % |
33578946043 |
98.87 % |
| Passed |
307701778 |
83.74 % |
27989568343 |
82.41 % |
| NotPassed |
55893777 |
15.21 % |
5589377700 |
16.46 % |
| |
|
|
|
|
| LowMAPQ |
49965532 |
13.60 % |
4996553200 |
14.71 % |
| MateUnmapped |
3832234 |
1.04 % |
383223400 |
1.13 % |
| Duplicate |
2169755 |
0.59 % |
216975500 |
0.64 % |
| BadOrientation |
6 |
0.00 % |
600 |
0.00 % |
| LargeInsertSize |
2470 |
0.00 % |
247000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3756014 |
1.02 % |
375601400 |
1.11 % |
| Unmapped |
3832234 |
1.04 % |
383223400 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
30744444300 |
100% |
| Passed |
25837188612 |
84.04 % |
| Trimmed |
1402701309 |
4.56 % |
| Clipped |
41766242 |
0.14 % |
| Overlapping |
2713109715 |
8.82 % |
| LowQuality |
749678422 |
2.44 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |