/EXTERNAL McGill EMC/methylation/K006153_1_lane_gembs

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SAMPLE K006153_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25797340 7324091 28.39 %
NonRefCpG 300284 58733 19.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006153_1_lane_gembs_coverage_refCpG.png ./IMG//K006153_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006153_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006153_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006153_1_lane_gembs_quality_refcpg.png ./IMG//K006153_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006153_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4655010 9.95 % 486207 2.79 % 82806 15.33 % 8074 4.90 %
Intermediate (0.3-0.7) 12958499 27.71 % 3274154 18.80 % 158161 29.28 % 33191 20.13 %
Methylated (0.7-1) 29156137 62.34 % 13655743 78.41 % 299125 55.38 % 123642 74.98 %
Median Methylation 0.780 0.860 0.740 0.850