/EXTERNAL McGill EMC/K006155_1_lane_gembs/McGill0007.Bisulfite-Seq.DNA_Methylation.EGAX00001425083.release_6

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SAMPLE K006155_1_lane_gembs LANE McGill0007.Bisulfite-Seq.DNA_Methylation.EGAX00001425083.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 441161132 100.00 % 220580566 100.00 % 220580566 100.00 %
General Reads 432119092 97.95 % 216848736 98.31 % 215270356 97.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 37705 0.01 % 18915 0.01 % 18790 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9004335 2.04 % 3712915 1.68 % 5291420 2.40 %
Bisulfite_reads C2T 221621664 50.24 % 111214459 50.42 % 110407205 50.05 %
Bisulfite_reads G2A 210535133 47.72 % 105653192 47.90 % 104881941 47.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 181363590
Average Unique 82.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 17537036197 39.36 % 7574605463 34.00 % 9962430734 44.72 %
Base Counts Overall C 4555286972 10.22 % 193489433 0.87 % 4361797539 19.58 %
Base Counts Overall G 4601012007 10.33 % 4398044132 19.74 % 202967875 0.91 %
Base Counts Overall T 17415826863 39.09 % 9888392380 44.39 % 7527434483 33.79 %
Base Counts Overall N 448112293 1.01 % 224105758 1.01 % 224006535 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.995235840071895
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 206322272



Mapping Quality

Mapping Quality Histogram
McGill0007.Bisulfite-Seq.DNA_Methylation.EGAX00001425083.release_6.mapq.png



Read Length

Read Length Reads
100 220580566
100 220580566



Insert Size Plot

Insert Size Histogram
McGill0007.Bisulfite-Seq.DNA_Methylation.EGAX00001425083.release_6.isize.png