/EXTERNAL McGill EMC/mapping_coverage/K006155_1_lane_gembs
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SAMPLE K006155_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
417476384 |
100% |
36022217777 |
100% |
| Mapped |
413346519 |
99.01 % |
35609231277 |
98.85 % |
| Passed |
335783732 |
80.43 % |
27852952577 |
77.32 % |
| NotPassed |
77562787 |
18.58 % |
7756278700 |
21.53 % |
| |
|
|
|
|
| LowMAPQ |
57677278 |
13.82 % |
5767727800 |
16.01 % |
| MateUnmapped |
4129865 |
0.99 % |
412986500 |
1.15 % |
| Duplicate |
14745498 |
3.53 % |
1474549800 |
4.09 % |
| BadOrientation |
40 |
0.00 % |
4000 |
0.00 % |
| LargeInsertSize |
121794 |
0.03 % |
12179400 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5018177 |
1.20 % |
501817700 |
1.39 % |
| Unmapped |
4129865 |
0.99 % |
412986500 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
33568068200 |
100% |
| Passed |
26104786671 |
77.77 % |
| Trimmed |
1453876679 |
4.33 % |
| Clipped |
33979362 |
0.10 % |
| Overlapping |
5681136261 |
16.92 % |
| LowQuality |
294289227 |
0.88 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |