/EXTERNAL McGill EMC/methylation/K006155_1_lane_gembs

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SAMPLE K006155_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24898993 4897073 19.67 %
NonRefCpG 404494 44162 10.92 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006155_1_lane_gembs_coverage_refCpG.png ./IMG//K006155_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006155_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006155_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006155_1_lane_gembs_quality_refcpg.png ./IMG//K006155_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006155_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5040629 11.89 % 485970 4.01 % 218767 30.75 % 17609 11.99 %
Intermediate (0.3-0.7) 12846647 30.30 % 2549569 21.03 % 218207 30.68 % 35744 24.33 %
Methylated (0.7-1) 24511461 57.81 % 9085291 74.96 % 274353 38.57 % 93573 63.69 %
Median Methylation 0.750 0.850 0.560 0.800