/EXTERNAL McGill EMC/K006156_1_lane_gembs

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SAMPLE K006156_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 362794602 100.00 % 181397301 100.00 % 181397301 100.00 %
General Reads 355608434 98.02 % 178551227 98.43 % 177057207 97.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 369951 0.10 % 185742 0.10 % 184209 0.10 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6816217 1.88 % 2660332 1.47 % 4155885 2.29 %
Bisulfite_reads C2T 181514983 50.03 % 91114841 50.23 % 90400142 49.84 %
Bisulfite_reads G2A 174463402 48.09 % 87622128 48.30 % 86841274 47.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 145453603
Average Unique 80.19 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14299346466 39.02 % 5637776715 30.77 % 8661569751 47.28 %
Base Counts Overall C 3841263386 10.48 % 187127886 1.02 % 3654135500 19.94 %
Base Counts Overall G 3862364091 10.54 % 3668791050 20.02 % 193573041 1.06 %
Base Counts Overall T 14212543924 38.79 % 8627050991 47.09 % 5585492933 30.49 %
Base Counts Overall N 426736935 1.16 % 200380759 1.09 % 226356176 1.24 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.992627152060896
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 166497529



Mapping Quality

Mapping Quality Histogram
K006156_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006156_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0037.Bisulfite-Seq.DNA_Methylation.EGAX00001273035.fastq_MS003701