/EXTERNAL McGill EMC/mapping_coverage/K006156_1_lane_gembs
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SAMPLE K006156_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
352652240 |
100% |
30699411210 |
100% |
| Mapped |
349148686 |
99.01 % |
30349055810 |
98.86 % |
| Passed |
287037354 |
81.39 % |
24137922610 |
78.63 % |
| NotPassed |
62111332 |
17.61 % |
6211133200 |
20.23 % |
| |
|
|
|
|
| LowMAPQ |
50263162 |
14.25 % |
5026316200 |
16.37 % |
| MateUnmapped |
3503554 |
0.99 % |
350355400 |
1.14 % |
| Duplicate |
2978524 |
0.84 % |
297852400 |
0.97 % |
| BadOrientation |
30 |
0.00 % |
3000 |
0.00 % |
| LargeInsertSize |
1908 |
0.00 % |
190800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8867708 |
2.51 % |
886770800 |
2.89 % |
| Unmapped |
3503554 |
0.99 % |
350355400 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28694561700 |
100% |
| Passed |
22441367171 |
78.21 % |
| Trimmed |
1243312893 |
4.33 % |
| Clipped |
40389897 |
0.14 % |
| Overlapping |
4516249193 |
15.74 % |
| LowQuality |
453242546 |
1.58 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |