/EXTERNAL McGill EMC/methylation/K006156_1_lane_gembs

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SAMPLE K006156_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25695779 4167745 16.22 %
NonRefCpG 314118 31601 10.06 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006156_1_lane_gembs_coverage_refCpG.png ./IMG//K006156_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006156_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006156_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006156_1_lane_gembs_quality_refcpg.png ./IMG//K006156_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006156_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7151634 14.99 % 515105 4.35 % 121977 21.19 % 5312 4.98 %
Intermediate (0.3-0.7) 15587136 32.67 % 2607656 22.03 % 191659 33.29 % 23737 22.25 %
Methylated (0.7-1) 24967002 52.34 % 8712505 73.61 % 262004 45.52 % 77638 72.77 %
Median Methylation 0.710 0.840 0.650 0.840