/EXTERNAL McGill EMC/K006158_1_lane_gembs/McGill0018.Bisulfite-Seq.DNA_Methylation.EGAX00001272929.fastq_MS001801

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SAMPLE K006158_1_lane_gembs LANE McGill0018.Bisulfite-Seq.DNA_Methylation.EGAX00001272929.fastq_MS001801

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1114024732 100.00 % 557012366 100.00 % 557012366 100.00 %
General Reads 869752272 78.07 % 433114873 77.76 % 436637399 78.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1981107 0.18 % 994464 0.18 % 986643 0.18 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 242291353 21.75 % 122903029 22.06 % 119388324 21.43 %
Bisulfite_reads C2T 443517455 39.81 % 220896731 39.66 % 222620724 39.97 %
Bisulfite_reads G2A 428215924 38.44 % 213212606 38.28 % 215003318 38.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 339961177
Average Unique 61.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42730303071 37.98 % 17619600320 31.32 % 25110702751 44.63 %
Base Counts Overall C 15042223332 13.37 % 3902014883 6.94 % 11140208449 19.80 %
Base Counts Overall G 14524412533 12.91 % 10771686918 19.15 % 3752725615 6.67 %
Base Counts Overall T 39039390020 34.70 % 23398155625 41.59 % 15641234395 27.80 %
Base Counts Overall N 1180168976 1.05 % 566791220 1.01 % 613377756 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9849502540112873
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 387610483



Mapping Quality

Mapping Quality Histogram
McGill0018.Bisulfite-Seq.DNA_Methylation.EGAX00001272929.fastq_MS001801.mapq.png



Read Length

Read Length Reads
100 557012366
100 557012366



Insert Size Plot

Insert Size Histogram
McGill0018.Bisulfite-Seq.DNA_Methylation.EGAX00001272929.fastq_MS001801.isize.png