/EXTERNAL McGill EMC/mapping_coverage/K006158_1_lane_gembs
BACK
SAMPLE K006158_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
829793049 |
100% |
76982218515 |
100% |
| Mapped |
806519198 |
97.20 % |
74654833415 |
96.98 % |
| Passed |
603761637 |
72.76 % |
54379077315 |
70.64 % |
| NotPassed |
202757561 |
24.43 % |
20275756100 |
26.34 % |
| |
|
|
|
|
| LowMAPQ |
115539654 |
13.92 % |
11553965400 |
15.01 % |
| MateUnmapped |
23273851 |
2.80 % |
2327385100 |
3.02 % |
| Duplicate |
40164134 |
4.84 % |
4016413400 |
5.22 % |
| BadOrientation |
30 |
0.00 % |
3000 |
0.00 % |
| LargeInsertSize |
126580 |
0.02 % |
12658000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
46927163 |
5.66 % |
4692716300 |
6.10 % |
| Unmapped |
23273851 |
2.80 % |
2327385100 |
3.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
60353876000 |
100% |
| Passed |
49737655977 |
82.41 % |
| Trimmed |
2772396845 |
4.59 % |
| Clipped |
113196931 |
0.19 % |
| Overlapping |
5861601754 |
9.71 % |
| LowQuality |
1869024493 |
3.10 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |