/EXTERNAL McGill EMC/methylation/K006158_1_lane_gembs

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SAMPLE K006158_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26540088 17037455 64.20 %
NonRefCpG 260461 141182 54.20 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006158_1_lane_gembs_coverage_refCpG.png ./IMG//K006158_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006158_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006158_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006158_1_lane_gembs_quality_refcpg.png ./IMG//K006158_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006158_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6435721 12.39 % 2730202 7.08 % 50989 10.41 % 15822 4.83 %
Intermediate (0.3-0.7) 14103011 27.16 % 9280163 24.07 % 139425 28.47 % 78677 24.01 %
Methylated (0.7-1) 31395250 60.45 % 26550384 68.85 % 299298 61.12 % 233141 71.16 %
Median Methylation 0.770 0.820 0.770 0.820