/EXTERNAL McGill EMC/K006159_1_lane_gembs/McGill0013.Bisulfite-Seq.DNA_Methylation.EGAX00001272896.fastq_MS001301

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SAMPLE K006159_1_lane_gembs LANE McGill0013.Bisulfite-Seq.DNA_Methylation.EGAX00001272896.fastq_MS001301

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 823345730 100.00 % 411672865 100.00 % 411672865 100.00 %
General Reads 798517788 96.98 % 400030887 97.17 % 398486901 96.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7444209 0.90 % 3730562 0.91 % 3713647 0.90 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17383733 2.11 % 7911416 1.92 % 9472317 2.30 %
Bisulfite_reads C2T 411229663 49.95 % 205987313 50.04 % 205242350 49.86 %
Bisulfite_reads G2A 394732334 47.94 % 197774136 48.04 % 196958198 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 315422590
Average Unique 76.62 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32003378373 38.49 % 12494921581 30.05 % 19508456792 46.92 %
Base Counts Overall C 9262339549 11.14 % 552897649 1.33 % 8709441900 20.95 %
Base Counts Overall G 9267149886 11.14 % 8698933236 20.92 % 568216650 1.37 %
Base Counts Overall T 31749901117 38.18 % 19412190161 46.69 % 12337710956 29.67 %
Base Counts Overall N 875149805 1.05 % 420016738 1.01 % 455133067 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9928748783645899
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 364127002



Mapping Quality

Mapping Quality Histogram
McGill0013.Bisulfite-Seq.DNA_Methylation.EGAX00001272896.fastq_MS001301.mapq.png



Read Length

Read Length Reads
100 411672865
100 411672865



Insert Size Plot

Insert Size Histogram
McGill0013.Bisulfite-Seq.DNA_Methylation.EGAX00001272896.fastq_MS001301.isize.png