/EXTERNAL McGill EMC/methylation/K006159_1_lane_gembs

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SAMPLE K006159_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26567072 16641948 62.64 %
NonRefCpG 263489 126909 48.16 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006159_1_lane_gembs_coverage_refCpG.png ./IMG//K006159_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006159_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006159_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006159_1_lane_gembs_quality_refcpg.png ./IMG//K006159_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006159_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7215648 13.92 % 3708458 9.66 % 66331 13.43 % 20480 6.61 %
Intermediate (0.3-0.7) 14321611 27.62 % 9340936 24.33 % 147017 29.76 % 77857 25.13 %
Methylated (0.7-1) 30311495 58.46 % 25347434 66.01 % 280617 56.81 % 211500 68.26 %
Median Methylation 0.760 0.800 0.750 0.810