{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 83211848, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 81481009, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.92, 
            "paired": 83211848, 
            "paired_qc_failed": 0, 
            "read1": 41605924, 
            "read1_qc_failed": 0, 
            "read2": 41605924, 
            "read2_qc_failed": 0, 
            "paired_properly": 80588826, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.85, 
            "with_itself": 81122383, 
            "with_itself_qc_failed": 0, 
            "singletons": 358626, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.43, 
            "diff_chroms": 89453, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 126123212, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 123585796, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.99, 
            "paired": 126123212, 
            "paired_qc_failed": 0, 
            "read1": 63061606, 
            "read1_qc_failed": 0, 
            "read2": 63061606, 
            "read2_qc_failed": 0, 
            "paired_properly": 122490924, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.12, 
            "with_itself": 122901660, 
            "with_itself_qc_failed": 0, 
            "singletons": 684136, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.54, 
            "diff_chroms": 61311, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 35698817, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1681302, 
            "paired_opt_dupes": 2922, 
            "dupes_pct": 0.047097
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 52026374, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1378590, 
            "paired_opt_dupes": 7099, 
            "dupes_pct": 0.026498
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 35696127, 
            "distinct_read_pairs": 34014943, 
            "one_read_pair": 32400547, 
            "two_read_pair": 1550241, 
            "NRF": 0.952903, 
            "PBC1": 0.952539, 
            "PBC2": 20.900329
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 51966555, 
            "distinct_read_pairs": 50590836, 
            "one_read_pair": 49267292, 
            "two_read_pair": 1284538, 
            "NRF": 0.973527, 
            "PBC1": 0.973838, 
            "PBC2": 38.354095
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 68035030, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 68035030, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 68035030, 
            "paired_qc_failed": 0, 
            "read1": 34017515, 
            "read1_qc_failed": 0, 
            "read2": 34017515, 
            "read2_qc_failed": 0, 
            "paired_properly": 68035030, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 68035030, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 101295568, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 101295568, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 101295568, 
            "paired_qc_failed": 0, 
            "read1": 50647784, 
            "read1_qc_failed": 0, 
            "read2": 50647784, 
            "read2_qc_failed": 0, 
            "paired_properly": 101295568, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 101295568, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 50508, 
        "Np": 0, 
        "N_opt": 50508, 
        "N_consv": 50508, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 155, 
            "corr_est_frag_len": 0.176877488086975, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.185548, 
            "argmin_corr": 1500, 
            "min_corr": 0.1706108, 
            "NSC": 1.036731, 
            "RSC": 0.4195371
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.126217641281
        }, 
        "rep1-pr1": {
            "FRiP": 0.120870638505
        }, 
        "rep1-pr2": {
            "FRiP": 0.121089365898
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0809834789086
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.30323068097, 
            "auc": 0.495054239236, 
            "ch_div": 0.102155793733, 
            "elbow_pt": 0.0, 
            "jsd": 0.56241165804, 
            "syn_auc": 0.50775469884, 
            "syn_elbow_pt": 0.102667846847, 
            "syn_jsd": 0.246176273675
        }
    ]
}
