/EXTERNAL McGill EMC/mapping_coverage/K006160_1_lane_gembs
BACK
SAMPLE K006160_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
701114576 |
100% |
65429069971 |
100% |
| Mapped |
690632823 |
98.50 % |
64380894671 |
98.40 % |
| Passed |
423874714 |
60.46 % |
37705083771 |
57.63 % |
| NotPassed |
266758109 |
38.05 % |
26675810900 |
40.77 % |
| |
|
|
|
|
| LowMAPQ |
150469562 |
21.46 % |
15046956200 |
23.00 % |
| MateUnmapped |
10481753 |
1.50 % |
1048175300 |
1.60 % |
| Duplicate |
72833524 |
10.39 % |
7283352400 |
11.13 % |
| BadOrientation |
22 |
0.00 % |
2200 |
0.00 % |
| LargeInsertSize |
100648 |
0.01 % |
10064800 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
43354353 |
6.18 % |
4335435300 |
6.63 % |
| Unmapped |
10481753 |
1.50 % |
1048175300 |
1.60 % |
Base Level Counts
| Bases |
# |
% |
| Total |
42378746500 |
100% |
| Passed |
35221830695 |
83.11 % |
| Trimmed |
1896409583 |
4.47 % |
| Clipped |
99506706 |
0.23 % |
| Overlapping |
4574156023 |
10.79 % |
| LowQuality |
586843493 |
1.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |