/EXTERNAL McGill EMC/K006161_1_lane_gembs

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SAMPLE K006161_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 329984378 100.00 % 164992189 100.00 % 164992189 100.00 %
General Reads 320999008 97.28 % 162415837 98.44 % 158583171 96.12 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 270578 0.08 % 136879 0.08 % 133699 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8714792 2.64 % 2439473 1.48 % 6275319 3.80 %
Bisulfite_reads C2T 164428563 49.83 % 83180304 50.41 % 81248259 49.24 %
Bisulfite_reads G2A 156841023 47.53 % 79372412 48.11 % 77468611 46.95 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 133284582
Average Unique 80.78 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12958935154 38.88 % 5592951651 33.56 % 7365983503 44.20 %
Base Counts Overall C 3524062309 10.57 % 241812060 1.45 % 3282250249 19.70 %
Base Counts Overall G 3595862972 10.79 % 3362708575 20.18 % 233154397 1.40 %
Base Counts Overall T 12786764316 38.37 % 7292163057 43.76 % 5494601259 32.97 %
Base Counts Overall N 462797427 1.39 % 174575746 1.05 % 288221681 1.73 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9638951959385389
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 154401109



Mapping Quality

Mapping Quality Histogram
K006161_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006161_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0024.Bisulfite-Seq.DNA_Methylation.EGAX00001425116.release_6