/EXTERNAL McGill EMC/mapping_coverage/K006161_1_lane_gembs
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SAMPLE K006161_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
317177600 |
100% |
29393543232 |
100% |
| Mapped |
311335129 |
98.16 % |
28809296132 |
98.01 % |
| Passed |
260810906 |
82.23 % |
23756873832 |
80.82 % |
| NotPassed |
50524223 |
15.93 % |
5052422300 |
17.19 % |
| |
|
|
|
|
| LowMAPQ |
42802802 |
13.49 % |
4280280200 |
14.56 % |
| MateUnmapped |
5842471 |
1.84 % |
584247100 |
1.99 % |
| Duplicate |
3826976 |
1.21 % |
382697600 |
1.30 % |
| BadOrientation |
8 |
0.00 % |
800 |
0.00 % |
| LargeInsertSize |
2656 |
0.00 % |
265600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3891781 |
1.23 % |
389178100 |
1.32 % |
| Unmapped |
5842471 |
1.84 % |
584247100 |
1.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26041175500 |
100% |
| Passed |
21842664234 |
83.88 % |
| Trimmed |
1186524089 |
4.56 % |
| Clipped |
40153063 |
0.15 % |
| Overlapping |
2244148605 |
8.62 % |
| LowQuality |
727685509 |
2.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |