/EXTERNAL McGill EMC/methylation/K006161_1_lane_gembs

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SAMPLE K006161_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24938535 4576333 18.35 %
NonRefCpG 319481 37752 11.82 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006161_1_lane_gembs_coverage_refCpG.png ./IMG//K006161_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006161_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006161_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006161_1_lane_gembs_quality_refcpg.png ./IMG//K006161_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006161_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4316627 10.02 % 327510 2.96 % 101090 18.31 % 6754 6.01 %
Intermediate (0.3-0.7) 12733222 29.55 % 2123414 19.18 % 171176 31.00 % 23499 20.92 %
Methylated (0.7-1) 26046192 60.44 % 8619586 77.86 % 279844 50.69 % 82063 73.06 %
Median Methylation 0.770 0.860 0.700 0.840