/EXTERNAL McGill EMC/K006162_1_lane_gembs

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SAMPLE K006162_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 600257168 100.00 % 300128584 100.00 % 300128584 100.00 %
General Reads 575545341 95.88 % 288700836 96.19 % 286844505 95.57 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 397247 0.07 % 199819 0.07 % 197428 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24314580 4.05 % 11227929 3.74 % 13086651 4.36 %
Bisulfite_reads C2T 294528721 49.07 % 147738119 49.22 % 146790602 48.91 %
Bisulfite_reads G2A 281413867 46.88 % 141162536 47.03 % 140251331 46.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 230589161
Average Unique 76.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 23459979116 38.70 % 10115278794 33.37 % 13344700322 44.02 %
Base Counts Overall C 6618589058 10.92 % 575279507 1.90 % 6043309551 19.94 %
Base Counts Overall G 6851792302 11.30 % 6242083527 20.59 % 609708775 2.01 %
Base Counts Overall T 23062945828 38.04 % 13077414945 43.14 % 9985530883 32.94 %
Base Counts Overall N 632667664 1.04 % 302930211 1.00 % 329737453 1.09 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9572203587138752
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 270657459



Mapping Quality

Mapping Quality Histogram
K006162_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006162_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0030.Bisulfite-Seq.DNA_Methylation.EGAX00001273018.fastq_MS003001