/EXTERNAL McGill EMC/K006162_1_lane_gembs/McGill0030.Bisulfite-Seq.DNA_Methylation.EGAX00001273018.fastq_MS003001

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SAMPLE K006162_1_lane_gembs LANE McGill0030.Bisulfite-Seq.DNA_Methylation.EGAX00001273018.fastq_MS003001

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	600257168	100.00 %	300128584	100.00 %	300128584	100.00 %
General Reads	575545341	95.88 %	288700836	96.19 %	286844505	95.57 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	397247	0.07 %	199819	0.07 %	197428	0.07 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	24314580	4.05 %	11227929	3.74 %	13086651	4.36 %
Bisulfite_reads C2T	294528721	49.07 %	147738119	49.22 %	146790602	48.91 %
Bisulfite_reads G2A	281413867	46.88 %	141162536	47.03 %	140251331	46.73 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	230589161
Average Unique	76.83 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	23459979116	38.70 %	10115278794	33.37 %	13344700322	44.02 %
Base Counts Overall C	6618589058	10.92 %	575279507	1.90 %	6043309551	19.94 %
Base Counts Overall G	6851792302	11.30 %	6242083527	20.59 %	609708775	2.01 %
Base Counts Overall T	23062945828	38.04 %	13077414945	43.14 %	9985530883	32.94 %
Base Counts Overall N	632667664	1.04 %	302930211	1.00 %	329737453	1.09 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9572203587138752
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	270657459

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	300128584
100	300128584

Insert Size Plot

Insert Size Histogram