/EXTERNAL McGill EMC/K006163_1_lane_gembs/McGill0009.Bisulfite-Seq.DNA_Methylation.EGAX00001272855.fastq_MS000901

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SAMPLE K006163_1_lane_gembs LANE McGill0009.Bisulfite-Seq.DNA_Methylation.EGAX00001272855.fastq_MS000901

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	948135542	100.00 %	474067771	100.00 %	474067771	100.00 %
General Reads	912056039	96.19 %	456879344	96.37 %	455176695	96.02 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1161258	0.12 %	582497	0.12 %	578761	0.12 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	34918245	3.68 %	16605930	3.50 %	18312315	3.86 %
Bisulfite_reads C2T	468339414	49.40 %	234609178	49.49 %	233730236	49.30 %
Bisulfite_reads G2A	444877883	46.92 %	222852663	47.01 %	222025220	46.83 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	376483395
Average Unique	79.42 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	36807883636	38.44 %	15213457650	31.77 %	21594425986	45.10 %
Base Counts Overall C	10749852302	11.23 %	953906792	1.99 %	9795945510	20.46 %
Base Counts Overall G	10937860459	11.42 %	9953120491	20.79 %	984739968	2.06 %
Base Counts Overall T	36246520484	37.85 %	21278066756	44.44 %	14968453728	31.26 %
Base Counts Overall N	1019572861	1.06 %	482293182	1.01 %	537279679	1.12 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9703777518392173
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	437934509

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	474067771
100	474067771

Insert Size Plot

Insert Size Histogram