/EXTERNAL McGill EMC/mapping_coverage/K006163_1_lane_gembs
BACK
SAMPLE K006163_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
901502603 |
100% |
81364118470 |
100% |
| Mapped |
892624139 |
99.02 % |
80476272070 |
98.91 % |
| Passed |
736547216 |
81.70 % |
64868579770 |
79.73 % |
| NotPassed |
156076923 |
17.31 % |
15607692300 |
19.18 % |
| |
|
|
|
|
| LowMAPQ |
134046960 |
14.87 % |
13404696000 |
16.47 % |
| MateUnmapped |
8878464 |
0.98 % |
887846400 |
1.09 % |
| Duplicate |
10600908 |
1.18 % |
1060090800 |
1.30 % |
| BadOrientation |
72 |
0.00 % |
7200 |
0.00 % |
| LargeInsertSize |
119316 |
0.01 % |
11931600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11309667 |
1.25 % |
1130966700 |
1.39 % |
| Unmapped |
8878464 |
0.98 % |
887846400 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
73635803500 |
100% |
| Passed |
60647114343 |
82.36 % |
| Trimmed |
3291919272 |
4.47 % |
| Clipped |
94813148 |
0.13 % |
| Overlapping |
8672410582 |
11.78 % |
| LowQuality |
929546155 |
1.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |