/EXTERNAL McGill EMC/methylation/K006163_1_lane_gembs

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SAMPLE K006163_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26630529 20019213 75.17 %
NonRefCpG 257571 164147 63.73 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006163_1_lane_gembs_coverage_refCpG.png ./IMG//K006163_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006163_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006163_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006163_1_lane_gembs_quality_refcpg.png ./IMG//K006163_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006163_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4780488 9.22 % 1756382 4.12 % 39488 8.12 % 12959 3.54 %
Intermediate (0.3-0.7) 10523753 20.29 % 7388451 17.34 % 109297 22.47 % 67203 18.38 %
Methylated (0.7-1) 36568142 70.50 % 33452942 78.53 % 337520 69.41 % 285494 78.08 %
Median Methylation 0.840 0.870 0.830 0.860