/EXTERNAL McGill EMC/mapping_coverage/K006164_1_lane_gembs
BACK
SAMPLE K006164_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
911677540 |
100% |
82410729565 |
100% |
| Mapped |
901325710 |
98.86 % |
81375546565 |
98.74 % |
| Passed |
728163722 |
79.87 % |
64059347765 |
77.73 % |
| NotPassed |
173161988 |
18.99 % |
17316198800 |
21.01 % |
| |
|
|
|
|
| LowMAPQ |
137990214 |
15.14 % |
13799021400 |
16.74 % |
| MateUnmapped |
10351830 |
1.14 % |
1035183000 |
1.26 % |
| Duplicate |
17266853 |
1.89 % |
1726685300 |
2.10 % |
| BadOrientation |
86 |
0.00 % |
8600 |
0.00 % |
| LargeInsertSize |
156340 |
0.02 % |
15634000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17748495 |
1.95 % |
1774849500 |
2.15 % |
| Unmapped |
10351830 |
1.14 % |
1035183000 |
1.26 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72796542100 |
100% |
| Passed |
59662304475 |
81.96 % |
| Trimmed |
3276764497 |
4.50 % |
| Clipped |
112398044 |
0.15 % |
| Overlapping |
8624796291 |
11.85 % |
| LowQuality |
1120278793 |
1.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |