/EXTERNAL McGill EMC/K006165_1_lane_gembs/McGill0045.Bisulfite-Seq.DNA_Methylation.EGAX00001273052.fastq_MS004501

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SAMPLE K006165_1_lane_gembs LANE McGill0045.Bisulfite-Seq.DNA_Methylation.EGAX00001273052.fastq_MS004501

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 372161520 100.00 % 186080760 100.00 % 186080760 100.00 %
General Reads 363225213 97.60 % 182366574 98.00 % 180858639 97.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 343313 0.09 % 172434 0.09 % 170879 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8592994 2.31 % 3541752 1.90 % 5051242 2.71 %
Bisulfite_reads C2T 185615069 49.87 % 93169166 50.07 % 92445903 49.68 %
Bisulfite_reads G2A 177953457 47.82 % 89369842 48.03 % 88583615 47.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 146201309
Average Unique 78.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14672214614 39.03 % 5738839766 30.54 % 8933374848 47.53 %
Base Counts Overall C 3963420497 10.54 % 206607332 1.10 % 3756813165 19.99 %
Base Counts Overall G 3979580534 10.59 % 3761202836 20.01 % 218377698 1.16 %
Base Counts Overall T 14482125171 38.53 % 8850128857 47.09 % 5631996314 29.97 %
Base Counts Overall N 490972704 1.31 % 237377969 1.26 % 253594735 1.35 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955690130632432
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 166341614



Mapping Quality

Mapping Quality Histogram
McGill0045.Bisulfite-Seq.DNA_Methylation.EGAX00001273052.fastq_MS004501.mapq.png



Read Length

Read Length Reads
100 186080760
100 186080760



Insert Size Plot

Insert Size Histogram
McGill0045.Bisulfite-Seq.DNA_Methylation.EGAX00001273052.fastq_MS004501.isize.png