/EXTERNAL McGill EMC/mapping_coverage/K006165_1_lane_gembs
BACK
SAMPLE K006165_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
358798005 |
100% |
29908466339 |
100% |
| Mapped |
355414552 |
99.06 % |
29570121039 |
98.87 % |
| Passed |
286016086 |
79.72 % |
22630274439 |
75.67 % |
| NotPassed |
69398466 |
19.34 % |
6939846600 |
23.20 % |
| |
|
|
|
|
| LowMAPQ |
54847596 |
15.29 % |
5484759600 |
18.34 % |
| MateUnmapped |
3383453 |
0.94 % |
338345300 |
1.13 % |
| Duplicate |
4476960 |
1.25 % |
447696000 |
1.50 % |
| BadOrientation |
56 |
0.00 % |
5600 |
0.00 % |
| LargeInsertSize |
2366 |
0.00 % |
236600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10071488 |
2.81 % |
1007148800 |
3.37 % |
| Unmapped |
3383453 |
0.94 % |
338345300 |
1.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28595225400 |
100% |
| Passed |
21077852605 |
73.71 % |
| Trimmed |
1211315449 |
4.24 % |
| Clipped |
45917683 |
0.16 % |
| Overlapping |
5919033278 |
20.70 % |
| LowQuality |
341106385 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |