/EXTERNAL McGill EMC/methylation/K006165_1_lane_gembs

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SAMPLE K006165_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26113205 3514333 13.46 %
NonRefCpG 320468 24735 7.72 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006165_1_lane_gembs_coverage_refCpG.png ./IMG//K006165_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006165_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006165_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006165_1_lane_gembs_quality_refcpg.png ./IMG//K006165_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006165_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7653252 15.75 % 483214 4.65 % 133110 22.59 % 4811 5.36 %
Intermediate (0.3-0.7) 16187792 33.31 % 2299030 22.14 % 198594 33.71 % 20124 22.40 %
Methylated (0.7-1) 24758639 50.94 % 7601229 73.21 % 257437 43.70 % 64902 72.24 %
Median Methylation 0.700 0.840 0.640 0.830