/EXTERNAL McGill EMC/K006167_1_lane_gembs

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SAMPLE K006167_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 824988074 100.00 % 412494037 100.00 % 412494037 100.00 %
General Reads 800865182 97.08 % 401559842 97.35 % 399305340 96.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 903041 0.11 % 453468 0.11 % 449573 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23219851 2.81 % 10480727 2.54 % 12739124 3.09 %
Bisulfite_reads C2T 411019326 49.82 % 206096079 49.96 % 204923247 49.68 %
Bisulfite_reads G2A 390748897 47.36 % 195917231 47.50 % 194831666 47.23 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 319625548
Average Unique 77.49 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31986904083 38.39 % 14031382526 33.68 % 17955521557 43.10 %
Base Counts Overall C 9384731404 11.26 % 727165069 1.75 % 8657566335 20.78 %
Base Counts Overall G 9649740839 11.58 % 8887572382 21.33 % 762168457 1.83 %
Base Counts Overall T 31435620639 37.73 % 17599932750 42.24 % 13835687889 33.21 %
Base Counts Overall N 866798509 1.04 % 415845010 1.00 % 450953499 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9549728114099099
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 380574316



Mapping Quality

Mapping Quality Histogram
K006167_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006167_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0026.Bisulfite-Seq.DNA_Methylation.EGAX00001272977.fastq_MS002601