/EXTERNAL McGill EMC/mapping_coverage/K006167_1_lane_gembs
BACK
SAMPLE K006167_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
790209086 |
100% |
72154922749 |
100% |
| Mapped |
779974149 |
98.70 % |
71131429049 |
98.58 % |
| Passed |
622200195 |
78.74 % |
55354033649 |
76.72 % |
| NotPassed |
157773954 |
19.97 % |
15777395400 |
21.87 % |
| |
|
|
|
|
| LowMAPQ |
133409106 |
16.88 % |
13340910600 |
18.49 % |
| MateUnmapped |
10234937 |
1.30 % |
1023493700 |
1.42 % |
| Duplicate |
10703899 |
1.35 % |
1070389900 |
1.48 % |
| BadOrientation |
74 |
0.00 % |
7400 |
0.00 % |
| LargeInsertSize |
346694 |
0.04 % |
34669400 |
0.05 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13314181 |
1.68 % |
1331418100 |
1.85 % |
| Unmapped |
10234937 |
1.30 % |
1023493700 |
1.42 % |
Base Level Counts
| Bases |
# |
% |
| Total |
62199388600 |
100% |
| Passed |
51358909505 |
82.57 % |
| Trimmed |
2801924057 |
4.50 % |
| Clipped |
88177132 |
0.14 % |
| Overlapping |
6757177819 |
10.86 % |
| LowQuality |
1193200087 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |