/EXTERNAL McGill EMC/methylation/K006167_1_lane_gembs

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SAMPLE K006167_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26414576 15983462 60.51 %
NonRefCpG 278552 133520 47.93 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006167_1_lane_gembs_coverage_refCpG.png ./IMG//K006167_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006167_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006167_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006167_1_lane_gembs_quality_refcpg.png ./IMG//K006167_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006167_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4817038 9.53 % 1244576 3.52 % 63830 12.27 % 15790 4.91 %
Intermediate (0.3-0.7) 12043747 23.82 % 6650329 18.82 % 134523 25.86 % 64802 20.15 %
Methylated (0.7-1) 33693801 66.65 % 27437026 77.66 % 321872 61.87 % 241049 74.94 %
Median Methylation 0.810 0.860 0.790 0.850