/EXTERNAL McGill EMC/K006168_1_lane_gembs

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SAMPLE K006168_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 329705790 100.00 % 164852895 100.00 % 164852895 100.00 %
General Reads 223103647 67.67 % 112146525 68.03 % 110957122 67.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1007 0.00 % 508 0.00 % 499 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 106601136 32.33 % 52705862 31.97 % 53895274 32.69 %
Bisulfite_reads C2T 117746570 35.71 % 59200443 35.91 % 58546127 35.51 %
Bisulfite_reads G2A 105358084 31.96 % 52946590 32.12 % 52411494 31.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 38860955
Average Unique 23.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10935155669 32.84 % 4783592581 28.73 % 6151563088 36.95 %
Base Counts Overall C 5548191393 16.66 % 1389664006 8.35 % 4158527387 24.98 %
Base Counts Overall G 5582137874 16.76 % 4250271495 25.53 % 1331866379 8.00 %
Base Counts Overall T 10850963469 32.59 % 6057858025 36.38 % 4793105444 28.79 %
Base Counts Overall N 383836385 1.15 % 168756288 1.01 % 215080097 1.29 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.027183555630973306
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 83898010



Mapping Quality

Mapping Quality Histogram
K006168_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006168_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0091.Bisulfite-Seq.DNA_Methylation.EGAX00001425188.release_6