/EXTERNAL McGill EMC/mapping_coverage/K006168_1_lane_gembs
BACK
SAMPLE K006168_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
219780459 |
100% |
21080702810 |
100% |
| Mapped |
214251402 |
97.48 % |
20527797110 |
97.38 % |
| Passed |
75764032 |
34.47 % |
6679060110 |
31.68 % |
| NotPassed |
138487370 |
63.01 % |
13848737000 |
65.69 % |
| |
|
|
|
|
| LowMAPQ |
94037124 |
42.79 % |
9403712400 |
44.61 % |
| MateUnmapped |
5529057 |
2.52 % |
552905700 |
2.62 % |
| Duplicate |
3354162 |
1.53 % |
335416200 |
1.59 % |
| BadOrientation |
20 |
0.00 % |
2000 |
0.00 % |
| LargeInsertSize |
464022 |
0.21 % |
46402200 |
0.22 % |
| |
|
|
|
|
| NotCorrectlyAligned |
40632042 |
18.49 % |
4063204200 |
19.27 % |
| Unmapped |
5529057 |
2.52 % |
552905700 |
2.62 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7531781700 |
100% |
| Passed |
6253411466 |
83.03 % |
| Trimmed |
318288673 |
4.23 % |
| Clipped |
112339395 |
1.49 % |
| Overlapping |
740382195 |
9.83 % |
| LowQuality |
107359971 |
1.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |