/EXTERNAL McGill EMC/methylation/K006168_1_lane_gembs

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SAMPLE K006168_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 19003032 740105 3.89 %
NonRefCpG 854900 2615 0.31 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006168_1_lane_gembs_coverage_refCpG.png ./IMG//K006168_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006168_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006168_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006168_1_lane_gembs_quality_refcpg.png ./IMG//K006168_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006168_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4688243 17.33 % 117845 5.57 % 581282 45.41 % 11779 33.43 %
Intermediate (0.3-0.7) 9981074 36.89 % 534220 25.25 % 441565 34.50 % 12326 34.99 %
Methylated (0.7-1) 12389390 45.79 % 1463559 69.18 % 257189 20.09 % 11124 31.58 %
Median Methylation 0.660 0.820 0.350 0.480