/EXTERNAL McGill EMC/K006170_1_lane_gembs

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SAMPLE K006170_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 574552766 100.00 % 287276383 100.00 % 287276383 100.00 %
General Reads 564266041 98.21 % 283401368 98.65 % 280864673 97.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 120630 0.02 % 60587 0.02 % 60043 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10166095 1.77 % 3814428 1.33 % 6351667 2.21 %
Bisulfite_reads C2T 287765657 50.09 % 144518678 50.31 % 143246979 49.86 %
Bisulfite_reads G2A 276621014 48.15 % 138943277 48.37 % 137677737 47.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 239003360
Average Unique 83.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 22844505612 39.37 % 9803286901 33.79 % 13041218711 44.95 %
Base Counts Overall C 5993388293 10.33 % 308946472 1.06 % 5684441821 19.59 %
Base Counts Overall G 6056410545 10.44 % 5741742251 19.79 % 314668294 1.08 %
Base Counts Overall T 22527693127 38.82 % 12867608348 44.35 % 9660084779 33.29 %
Base Counts Overall N 607831789 1.05 % 293330711 1.01 % 314501078 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9804407834821285
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 273168827



Mapping Quality

Mapping Quality Histogram
K006170_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006170_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0002.Bisulfite-Seq.DNA_Methylation.EGAX00001272804.fastq_MS000205