/EXTERNAL McGill EMC/mapping_coverage/K006170_1_lane_gembs
BACK
SAMPLE K006170_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
559752377 |
100% |
51965530823 |
100% |
| Mapped |
554049025 |
98.98 % |
51395195623 |
98.90 % |
| Passed |
471888075 |
84.30 % |
43179100623 |
83.09 % |
| NotPassed |
82160950 |
14.68 % |
8216095000 |
15.81 % |
| |
|
|
|
|
| LowMAPQ |
72356072 |
12.93 % |
7235607200 |
13.92 % |
| MateUnmapped |
5703352 |
1.02 % |
570335200 |
1.10 % |
| Duplicate |
4524429 |
0.81 % |
452442900 |
0.87 % |
| BadOrientation |
36 |
0.00 % |
3600 |
0.00 % |
| LargeInsertSize |
3644 |
0.00 % |
364400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5276769 |
0.94 % |
527676900 |
1.02 % |
| Unmapped |
5703352 |
1.02 % |
570335200 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
47158953100 |
100% |
| Passed |
40038304264 |
84.90 % |
| Trimmed |
2178488056 |
4.62 % |
| Clipped |
54935712 |
0.12 % |
| Overlapping |
3924916765 |
8.32 % |
| LowQuality |
962308303 |
2.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |