/EXTERNAL McGill EMC/methylation/K006170_1_lane_gembs

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SAMPLE K006170_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26151333 10796805 41.29 %
NonRefCpG 290872 91625 31.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006170_1_lane_gembs_coverage_refCpG.png ./IMG//K006170_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006170_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006170_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006170_1_lane_gembs_quality_refcpg.png ./IMG//K006170_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006170_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5002256 10.30 % 1025785 4.07 % 81677 15.33 % 14330 5.98 %
Intermediate (0.3-0.7) 13945871 28.72 % 5532456 21.93 % 160136 30.06 % 55807 23.29 %
Methylated (0.7-1) 29611600 60.98 % 18672646 74.01 % 290901 54.61 % 169457 70.73 %
Median Methylation 0.770 0.840 0.730 0.830