/EXTERNAL McGill EMC/K006172_1_lane_gembs/McGill0176.Bisulfite-Seq.DNA_Methylation.EGAX00001425271.release_6

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SAMPLE K006172_1_lane_gembs LANE McGill0176.Bisulfite-Seq.DNA_Methylation.EGAX00001425271.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 314313282 100.00 % 157156641 100.00 % 157156641 100.00 %
General Reads 307844531 97.94 % 153551886 97.71 % 154292645 98.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 105631 0.03 % 52598 0.03 % 53033 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6363120 2.02 % 3552157 2.26 % 2810963 1.79 %
Bisulfite_reads C2T 157436363 50.09 % 78535736 49.97 % 78900627 50.21 %
Bisulfite_reads G2A 150513799 47.89 % 75068748 47.77 % 75445051 48.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 125554740
Average Unique 79.89 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12346713557 38.89 % 4748298470 29.91 % 7598415087 47.87 %
Base Counts Overall C 3382733296 10.66 % 162289634 1.02 % 3220443662 20.29 %
Base Counts Overall G 3126286464 9.85 % 2965629977 18.68 % 160656487 1.01 %
Base Counts Overall T 12508843758 39.40 % 7794656400 49.11 % 4714187358 29.70 %
Base Counts Overall N 381064407 1.20 % 201946260 1.27 % 179118147 1.13 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9921711132003057
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 147518520



Mapping Quality

Mapping Quality Histogram
McGill0176.Bisulfite-Seq.DNA_Methylation.EGAX00001425271.release_6.mapq.png



Read Length

Read Length Reads
100 157156641
100 157156641



Insert Size Plot

Insert Size Histogram
McGill0176.Bisulfite-Seq.DNA_Methylation.EGAX00001425271.release_6.isize.png