/EXTERNAL McGill EMC/mapping_coverage/K006172_1_lane_gembs
BACK
SAMPLE K006172_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
305787845 |
100% |
26362787025 |
100% |
| Mapped |
301751017 |
98.68 % |
25959104225 |
98.47 % |
| Passed |
251957913 |
82.40 % |
20979793825 |
79.58 % |
| NotPassed |
49793104 |
16.28 % |
4979310400 |
18.89 % |
| |
|
|
|
|
| LowMAPQ |
42713792 |
13.97 % |
4271379200 |
16.20 % |
| MateUnmapped |
4036828 |
1.32 % |
403682800 |
1.53 % |
| Duplicate |
2061781 |
0.67 % |
206178100 |
0.78 % |
| BadOrientation |
6 |
0.00 % |
600 |
0.00 % |
| LargeInsertSize |
1760 |
0.00 % |
176000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5015765 |
1.64 % |
501576500 |
1.90 % |
| Unmapped |
4036828 |
1.32 % |
403682800 |
1.53 % |
Base Level Counts
| Bases |
# |
% |
| Total |
25187181500 |
100% |
| Passed |
19583905229 |
77.75 % |
| Trimmed |
1060672230 |
4.21 % |
| Clipped |
35344854 |
0.14 % |
| Overlapping |
4172042821 |
16.56 % |
| LowQuality |
335216366 |
1.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |