/EXTERNAL McGill EMC/methylation/K006172_1_lane_gembs

BACK

SAMPLE K006172_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 21361383 2283510 10.69 %
NonRefCpG 369538 14189 3.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006172_1_lane_gembs_coverage_refCpG.png ./IMG//K006172_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006172_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006172_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006172_1_lane_gembs_quality_refcpg.png ./IMG//K006172_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006172_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5423279 13.81 % 242952 3.34 % 203794 31.04 % 3647 5.97 %
Intermediate (0.3-0.7) 11703813 29.81 % 1368238 18.80 % 205948 31.37 % 12173 19.92 %
Methylated (0.7-1) 22140395 56.38 % 5667457 77.86 % 246829 37.59 % 45276 74.11 %
Median Methylation 0.740 0.860 0.550 0.850