/EXTERNAL McGill EMC/K006173_1_lane_gembs/McGill0266.Bisulfite-Seq.DNA_Methylation.EGAX00001273301.fastq_MS026601

BACK

SAMPLE K006173_1_lane_gembs LANE McGill0266.Bisulfite-Seq.DNA_Methylation.EGAX00001273301.fastq_MS026601

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 958328882 100.00 % 479164441 100.00 % 479164441 100.00 %
General Reads 864028571 90.16 % 429159793 89.56 % 434868778 90.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 889155 0.09 % 445689 0.09 % 443466 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 93411156 9.75 % 49558959 10.34 % 43852197 9.15 %
Bisulfite_reads C2T 441013438 46.02 % 219115602 45.73 % 221897836 46.31 %
Bisulfite_reads G2A 423904288 44.23 % 210489880 43.93 % 213414408 44.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 353814328
Average Unique 73.84 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37602981711 38.85 % 15165915102 31.34 % 22437066609 46.36 %
Base Counts Overall C 11015310957 11.38 % 1536233023 3.17 % 9479077934 19.59 %
Base Counts Overall G 11361748081 11.74 % 9571173405 19.78 % 1790574676 3.70 %
Base Counts Overall T 35826628432 37.01 % 21636001428 44.71 % 14190627004 29.32 %
Base Counts Overall N 984547901 1.02 % 486285583 1.00 % 498262318 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9955307915308778
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 406642453



Mapping Quality

Mapping Quality Histogram
McGill0266.Bisulfite-Seq.DNA_Methylation.EGAX00001273301.fastq_MS026601.mapq.png



Read Length

Read Length Reads
100 479164441
100 479164441



Insert Size Plot

Insert Size Histogram
McGill0266.Bisulfite-Seq.DNA_Methylation.EGAX00001273301.fastq_MS026601.isize.png