/EXTERNAL McGill EMC/mapping_coverage/K006173_1_lane_gembs
BACK
SAMPLE K006173_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
845190948 |
100% |
78562117548 |
100% |
| Mapped |
828242048 |
97.99 % |
76867227548 |
97.84 % |
| Passed |
674043339 |
79.75 % |
61447356648 |
78.21 % |
| NotPassed |
154198709 |
18.24 % |
15419870900 |
19.63 % |
| |
|
|
|
|
| LowMAPQ |
125099962 |
14.80 % |
12509996200 |
15.92 % |
| MateUnmapped |
16948900 |
2.01 % |
1694890000 |
2.16 % |
| Duplicate |
18960460 |
2.24 % |
1896046000 |
2.41 % |
| BadOrientation |
66 |
0.00 % |
6600 |
0.00 % |
| LargeInsertSize |
138500 |
0.02 % |
13850000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9999721 |
1.18 % |
999972100 |
1.27 % |
| Unmapped |
16948900 |
2.01 % |
1694890000 |
2.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
67377174400 |
100% |
| Passed |
56863403154 |
84.40 % |
| Trimmed |
3087999527 |
4.58 % |
| Clipped |
115669223 |
0.17 % |
| Overlapping |
5814148529 |
8.63 % |
| LowQuality |
1495953967 |
2.22 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |