/EXTERNAL McGill EMC/methylation/K006173_1_lane_gembs

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SAMPLE K006173_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26680101 20105543 75.36 %
NonRefCpG 255725 163518 63.94 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006173_1_lane_gembs_coverage_refCpG.png ./IMG//K006173_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006173_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006173_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006173_1_lane_gembs_quality_refcpg.png ./IMG//K006173_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006173_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7436610 14.19 % 4687307 10.81 % 60615 12.56 % 29531 8.25 %
Intermediate (0.3-0.7) 10632137 20.29 % 7667753 17.68 % 107271 22.24 % 64184 17.93 %
Methylated (0.7-1) 34334819 65.52 % 31015941 71.51 % 314542 65.20 % 264163 73.81 %
Median Methylation 0.820 0.850 0.820 0.860