/EXTERNAL McGill EMC/K006174_1_lane_gembs/McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425298.release_6

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SAMPLE K006174_1_lane_gembs LANE McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425298.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 319688580 100.00 % 159844290 100.00 % 159844290 100.00 %
General Reads 312436788 97.73 % 156621247 97.98 % 155815541 97.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 126052 0.04 % 63180 0.04 % 62872 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7125740 2.23 % 3159863 1.98 % 3965877 2.48 %
Bisulfite_reads C2T 159838407 50.00 % 80120728 50.12 % 79717679 49.87 %
Bisulfite_reads G2A 152724433 47.77 % 76563699 47.90 % 76160734 47.65 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 132139141
Average Unique 82.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12531270654 38.81 % 4860929683 30.11 % 7670340971 47.51 %
Base Counts Overall C 3433311789 10.63 % 182043712 1.13 % 3251268077 20.14 %
Base Counts Overall G 3460414987 10.72 % 3278532532 20.31 % 181882455 1.13 %
Base Counts Overall T 12529143076 38.80 % 7659931631 47.45 % 4869211445 30.16 %
Base Counts Overall N 334406074 1.04 % 162835732 1.01 % 171570342 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945827716125488
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 151130987



Mapping Quality

Mapping Quality Histogram
McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425298.release_6.mapq.png



Read Length

Read Length Reads
100 159844290
100 159844290



Insert Size Plot

Insert Size Histogram
McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425298.release_6.isize.png